STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptk_4Tyrosine-protein kinase ptk. (534 aa)    
Predicted Functional Partners:
CUP88116.1
Polysaccharide export protein Wza.
 0.998
wcaJ_3
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
  
 
 0.994
CUO57264.1
Polysaccharide export protein Wza.
 0.993
CUP56442.1
Polysaccharide export protein Wza.
 0.993
CUP78850.1
Polysaccharide export protein Wza.
 0.993
kpsD
Polysialic acid transport protein kpsD precursor.
  
 0.971
capD
UDP-glucose 4-epimerase.
  
 
 0.912
wcaJ_1
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
  
 
 0.884
wcaJ_2
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
  
 
 0.884
rfbM_3
Mannose-1-phosphate guanylyltransferase rfbM.
  
 
 0.851
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.