STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepM_1Putative murein DD-endopeptidase, MepM-like. (322 aa)    
Predicted Functional Partners:
soxR
Putative transcriptional regulator.
       0.796
KWR54793.1
Hypothetical protein.
  
   
 0.717
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.712
mrcA
Penicillin-binding protein 1A.
  
   
 0.563
cwlS
Putative D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase, CwlS precursor-like.
  
 
 0.531
mepM_2
Putative murein DD-endopeptidase, MepM-like.
 
 
0.510
envC
Putative murein hydrolase activator, EnvC precursor-like.
 
   
 0.487
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.456
mltD_1
Membrane-bound lytic murein transglycosylase D precursor.
 
 
 0.449
KWR54562.1
Protein of unknown function (DUF4783).
  
     0.406
Your Current Organism:
Bacteroides stercoris
NCBI taxonomy Id: 46506
Other names: ATCC 43183, B. stercoris, CCUG 38733, CIP 104203, JCM 9496, NCTC 13053, VPI B5-21
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