Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KWR55323.1DNA primase. (319 aa)    
Predicted Functional Partners:
KWR55324.1
AAA domain protein.
 
     0.855
KWR55325.1
Protein of unknown function (DUF3853).
 
     0.813
KWR55328.1
Putative site-specific tyrosine recombinase, XerC-like; Belongs to the 'phage' integrase family.
 
     0.783
KWR57032.1
nusG-like transcription termination factor.
  
    0.649
KWR57710.1
nusG-like transcription termination factor.
  
    0.647
fadR
Fatty acid metabolism regulator protein.
  
     0.634
KWR57585.1
Putative DNA-binding transcriptional regulator.
  
     0.604
KWR52094.1
AsmA-like C-terminal region.
  
     0.598
KWR53794.1
AAA domain protein.
 
     0.589
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
   0.583
Your Current Organism:
Bacteroides stercoris
NCBI taxonomy Id: 46506
Other names: ATCC 43183, B. stercoris, CCUG 38733, CIP 104203, JCM 9496, NCTC 13053, VPI B5-21
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