Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWR54477.1Hypothetical protein. (522 aa)    
Predicted Functional Partners:
KWR54478.1
Toprim-like protein.
       0.836
KWR54479.1
Bacterial PH domain protein.
       0.777
KWR54480.1
Hypothetical protein.
       0.776
KWR54481.1
Hypothetical protein.
       0.745
KWR54482.1
Hypothetical protein.
       0.709
KWR54476.1
Hypothetical protein.
       0.707
KWR54475.1
Protein of unknown function (DUF4099).
       0.675
mepM_4
Putative murein DD-endopeptidase, MepM-like.
       0.630
KWR54484.1
Hypothetical protein.
       0.603
KWR54485.1
Hypothetical protein.
       0.566
Your Current Organism:
Bacteroides stercoris
NCBI taxonomy Id: 46506
Other names: ATCC 43183, B. stercoris, CCUG 38733, CIP 104203, JCM 9496, NCTC 13053, VPI B5-21
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