Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWR53583.1Protein of unknown function (DUF3575). (525 aa)    
Predicted Functional Partners:
KWR53582.1
Hypothetical protein.
       0.777
KWR52861.1
OmpA family protein.
 
     0.734
KWR53225.1
Protein of unknown function (DUF3868).
 
     0.721
pdsO
Proteobacterial sortase system OmpA family protein.
 
     0.719
KWR53224.1
Protein of unknown function (DUF3575).
  
     0.702
KWR57642.1
Protein of unknown function (DUF3868).
 
     0.701
KWR57231.1
Archaea bacterial proteins of unknown function.
  
     0.698
KWR52992.1
Phage terminase large subunit.
  
    0.685
sbcD
SbcD-like nuclease.
  
     0.679
dnaG_2
DNA primase.
  
 
   0.678
Your Current Organism:
Bacteroides stercoris
NCBI taxonomy Id: 46506
Other names: ATCC 43183, B. stercoris, CCUG 38733, CIP 104203, JCM 9496, NCTC 13053, VPI B5-21
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