STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWR53392.1Putative Zn-ribbon protein; Possibly nucleic acid-binding. (276 aa)    
Predicted Functional Partners:
KWR53391.1
Putative GTP cyclohydrolase 1 type 2; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.935
KWR53390.1
ABC-type uncharacterized transport system, permease component.
       0.742
bamA
Putative outer membrane protein assembly factor, BamA precursor-like.
  
     0.724
KWR51787.1
Putative permease.
  
     0.708
glnQ
Putative glutamine transport ATP-binding protein, GlnQ-like.
       0.693
KWR56604.1
Hypothetical protein.
  
     0.675
KWR57627.1
Rpb6-like RNA polymerase.
 
     0.672
ttgC
Putative efflux pump outer membrane protein, TtgC precursor-like.
       0.647
KWR51754.1
Protein of unknown function (DUF2723).
  
     0.639
KWR53389.1
Hypothetical protein.
       0.613
Your Current Organism:
Bacteroides stercoris
NCBI taxonomy Id: 46506
Other names: ATCC 43183, B. stercoris, CCUG 38733, CIP 104203, JCM 9496, NCTC 13053, VPI B5-21
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