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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttgCPutative efflux pump outer membrane protein, TtgC precursor-like. (479 aa)    
Predicted Functional Partners:
srpA_3
Putative solvent efflux pump periplasmic linker, SrpA precursor-like; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.973
bepE_3
Putative efflux pump membrane transporter, BepE-like; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.963
mdtE_2
Putative multidrug resistance protein, MdtE precursor-like; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.888
bepF
Putative efflux pump periplasmic linker, BepF-like; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.886
bepE_1
Putative efflux pump membrane transporter, BepE-like; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.861
acrF_2
Putative multidrug export protein, AcrF-like; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.855
KWR53391.1
Putative GTP cyclohydrolase 1 type 2; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.717
KWR53392.1
Putative Zn-ribbon protein; Possibly nucleic acid-binding.
       0.717
srpA_1
Putative solvent efflux pump periplasmic linker, SrpA precursor-like; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.694
emrA_3
Putative multidrug export protein, EmrA-like.
 
  0.661
Your Current Organism:
Bacteroides stercoris
NCBI taxonomy Id: 46506
Other names: ATCC 43183, B. stercoris, CCUG 38733, CIP 104203, JCM 9496, NCTC 13053, VPI B5-21
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