STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yesS_2Putative HTH-type transcriptional regulator, YesS-like. (288 aa)    
Predicted Functional Partners:
KWR52435.1
Major facilitator superfamily protein.
 
   
 0.828
emrA_3
Putative multidrug export protein, EmrA-like.
     
 0.756
tolC_7
Putative outer membrane protein, TolC precursor-like.
 
   
 0.747
adaA_2
Putative bifunctional transcriptional activator/DNA repair enzyme, AdaA-like.
  
     0.662
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.516
KWR55119.1
Putative transcriptional activator, FtrA-like.
  
     0.512
xylR_2
Xylose operon regulatory protein.
  
     0.468
melR
Melibiose operon regulatory protein.
  
     0.454
rhaR_2
Putative HTH-type transcriptional activator, RhaR-like.
  
     0.442
KWR52755.1
Putative DNA-binding transcriptional regulator, AraC-like.
  
     0.434
Your Current Organism:
Bacteroides stercoris
NCBI taxonomy Id: 46506
Other names: ATCC 43183, B. stercoris, CCUG 38733, CIP 104203, JCM 9496, NCTC 13053, VPI B5-21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.