Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKL64987.1 | AKL65318.1 | M444_05830 | M444_07850 | 3-demethylubiquinone-9 3-methyltransferase. | Hypothetical protein. | 0.580 |
AKL64987.1 | AKL65890.1 | M444_05830 | M444_11255 | 3-demethylubiquinone-9 3-methyltransferase. | Epimerase. | 0.644 |
AKL65313.1 | AKL65315.1 | M444_07825 | M444_07835 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.789 |
AKL65313.1 | AKL65317.1 | M444_07825 | M444_07845 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Hypothetical protein. | 0.765 |
AKL65313.1 | AKL65318.1 | M444_07825 | M444_07850 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Hypothetical protein. | 0.765 |
AKL65313.1 | AKL65319.1 | M444_07825 | M444_07855 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | Regulator. | 0.458 |
AKL65313.1 | alaS | M444_07825 | M444_07840 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.765 |
AKL65313.1 | aroB | M444_07825 | M444_07805 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.995 |
AKL65313.1 | aroQ | M444_07825 | M444_07800 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.991 |
AKL65313.1 | rpsD | M444_07825 | M444_07860 | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.555 |
AKL65315.1 | AKL65313.1 | M444_07835 | M444_07825 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.789 |
AKL65315.1 | AKL65317.1 | M444_07835 | M444_07845 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.895 |
AKL65315.1 | AKL65318.1 | M444_07835 | M444_07850 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.895 |
AKL65315.1 | AKL65319.1 | M444_07835 | M444_07855 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Regulator. | 0.601 |
AKL65315.1 | alaS | M444_07835 | M444_07840 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.982 |
AKL65315.1 | aroB | M444_07835 | M444_07805 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.665 |
AKL65315.1 | aroQ | M444_07835 | M444_07800 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.688 |
AKL65315.1 | rpsD | M444_07835 | M444_07860 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.555 |
AKL65317.1 | AKL65313.1 | M444_07845 | M444_07825 | Hypothetical protein. | Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family. | 0.765 |
AKL65317.1 | AKL65315.1 | M444_07845 | M444_07835 | Hypothetical protein. | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.895 |
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