STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN46054.12-hydroxyacid dehydrogenase. (351 aa)    
Predicted Functional Partners:
AMN46053.1
Type III restriction enzyme, res subunit.
 
     0.824
AMN46055.1
DNA methylase N-4.
       0.667
AMN46057.1
Hypothetical protein.
       0.662
AMN46056.1
Abortive phage resistance protein.
       0.647
AMN46014.1
Type I restriction enzyme, S subunit.
  
    0.563
AMN45520.1
Type I restriction-modification system, S subunit.
  
    0.484
AMN45522.1
Type I restriction enzyme M protein.
  
    0.475
AMN46012.1
Type I restriction-modification protein subunit M.
  
    0.475
AMN47505.1
Hypothetical protein.
  
    0.471
AMN45513.1
Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.433
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
Server load: low (16%) [HD]