STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN46337.1ABC transporter gliding motility ATPase protein. (263 aa)    
Predicted Functional Partners:
AMN46336.1
ABC transporter gliding motility membrane spanning component.
 
 0.977
AMN45651.1
ABC transport system permease protein.
 
  
 0.925
AMN47109.1
ABC transport system permease protein.
 
  
 0.925
AMN48024.1
ABC transport system permease protein.
 
  
 0.925
AMN48025.1
ABC transport system permease protein.
 
  
 0.916
AMN47108.1
ABC transport system permease protein.
 
  
 0.915
AMN46335.1
ABC transporter gliding motility auxiliary component.
 
  
 0.908
AMN46284.1
ABC transport system permease protein.
 
  
 0.889
AMN46334.1
Hypothetical protein.
 
     0.886
AMN47782.1
Membrane protein.
 
 
 0.688
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.