STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47068.1Two-component system, OmpR family, sensor histidine kinase PhoQ. (471 aa)    
Predicted Functional Partners:
AMN47069.1
Transcriptional regulator.
 0.994
AMN47594.1
Hypothetical protein.
 
 
 
 0.890
AMN47974.1
Hypothetical protein.
  
 
 0.883
AMN45909.1
Transcriptional regulator.
 
 0.859
AMN47653.1
Dihydrolipoamide dehydrogenase.
    
 0.809
AMN47071.1
Hypothetical protein.
 
     0.708
AMN46082.1
Hypothetical protein.
 
 
 0.657
AMN48006.1
Chemotaxis protein CheY.
 
 
 0.645
AMN48053.1
Chemotaxis protein CheY.
 
 
 0.639
AMN47879.1
Transcriptional regulator.
 
 
 0.631
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.