STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47406.1TonB-dependent receptor. (687 aa)    
Predicted Functional Partners:
AMN47535.1
Hypothetical protein.
  
   
 0.675
AMN45752.1
Hypothetical protein.
  
   
 0.674
AMN47573.1
Hypothetical protein.
  
   
 0.672
AMN47695.1
Hypothetical protein.
  
   
 0.670
AMN47785.1
TonB-dependent receptor.
  
   
 0.657
AMN47763.1
Hypothetical protein.
  
   
 0.650
AMN46252.1
Hypothetical protein.
  
   
 0.647
AMN47868.1
Hypothetical protein.
  
  
 0.647
AMN45896.1
Hypothetical protein.
  
   
 0.646
AMN47923.1
Hypothetical protein.
  
   
 0.644
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.