STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47447.1Hypothetical protein. (330 aa)    
Predicted Functional Partners:
AMN47448.1
Hypothetical protein.
 
     0.907
AMN47446.1
Hypothetical protein.
  
  
 0.791
AMN47457.1
Hypothetical protein.
  
     0.769
AMN47445.1
Hypothetical protein.
 
 
 0.692
AMN47444.1
SAM-dependent methyltransferase.
 
     0.656
AMN46438.1
Sugar transferase.
 
  
 0.615
AMN47439.1
NAD-dependent dehydratase.
 
 
 0.596
AMN47470.1
Hypothetical protein.
 
  
 0.530
AMN47438.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.518
AMN47436.1
Glucose-1-phosphate cytidylyltransferase.
 
 
 0.494
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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