STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47607.1ABC transporter permease. (255 aa)    
Predicted Functional Partners:
AMN47606.1
Hypothetical protein.
 
 0.998
AMN47608.1
Hypothetical protein.
 0.998
AMN48200.1
Iron ABC transporter ATP-binding protein.
 0.981
AMN47605.1
Hypothetical protein.
 
 
 0.955
AMN48199.1
Hypothetical protein.
  
 0.947
AMN48201.1
Hypothetical protein.
  
  
 
0.923
AMN47604.1
Hypothetical protein.
  
 0.903
AMN46373.1
Hypothetical protein.
   
   0.628
AMN47966.1
Hypothetical protein.
   
   0.628
AMN46124.1
Lipopolysaccharide export system ATP-binding protein.
  
  0.583
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.