STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47688.1Short-chain dehydrogenase. (255 aa)    
Predicted Functional Partners:
AMN48187.1
SDR family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.769
AMN47735.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.723
AMN47689.1
Nitronate monooxygenase.
  
    0.539
AMN47687.1
acyl-CoA dehydrogenase.
 
  0.508
AMN45753.1
Hypothetical protein.
  
   0.487
AMN47681.1
Aminoglycoside phosphotransferase.
   0.479
AMN46958.1
Aminoglycoside phosphotransferase.
   0.475
AMN45897.1
Hypothetical protein.
  
   0.467
AMN47680.1
acyl-CoA dehydrogenase.
 
  0.443
AMN46988.1
Malonyl CoA-ACP transacylase.
 
 
 0.442
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.