STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47787.1Hypothetical protein. (329 aa)    
Predicted Functional Partners:
AMN47788.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.969
AMN46220.1
Hypothetical protein.
 
 
 
0.928
AMN48037.1
Hypothetical protein.
     
  0.900
AMN46219.1
RNA polymerase subunit sigma24; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.855
AMN46285.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.828
AMN47695.1
Hypothetical protein.
 
  
 0.647
AMN45896.1
Hypothetical protein.
 
  
 0.632
AMN45752.1
Hypothetical protein.
 
  
 0.609
AMN47406.1
TonB-dependent receptor.
 
  
 0.600
AMN47763.1
Hypothetical protein.
 
  
 0.599
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.