STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN47911.1Aminotransferase. (424 aa)    
Predicted Functional Partners:
AMN47910.1
16S rRNA methyltransferase; Belongs to the methyltransferase superfamily.
  
    0.777
AMN47909.1
16S rRNA pseudouridine516 synthase; Belongs to the pseudouridine synthase RsuA family.
       0.623
AMN47912.1
Hypothetical protein.
       0.558
AMN47142.1
Bifunctional aspartokinase / homoserine dehydrogenase 1; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.538
AMN46866.1
Prephenate dehydratase.
     
 0.489
AMN47908.1
Nucleoprotein/polynucleotide-associated enzyme.
       0.472
AMN46137.1
Chorismate mutase / prephenate dehydrogenase.
     
 0.465
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.416
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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