STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN48068.1AbrB family transcriptional regulator. (105 aa)    
Predicted Functional Partners:
AMN48067.1
Toxin YhaV.
  
 0.997
AMN48153.1
Hypothetical protein.
  
     0.754
AMN47566.1
Hypothetical protein.
  
     0.710
AMN48012.1
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.693
AMN45538.1
Hypothetical protein.
  
     0.605
AMN45536.1
Hypothetical protein.
  
     0.594
AMN45537.1
Hypothetical protein.
 
     0.592
AMN45539.1
Hypothetical protein.
  
   
 0.588
AMN47550.1
Hypothetical protein.
  
     0.544
AMN47578.1
Hypothetical protein.
  
     0.538
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.