STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN48187.1SDR family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (308 aa)    
Predicted Functional Partners:
AMN46241.1
Short-chain dehydrogenase.
 
  
 0.780
AMN47564.1
Hypothetical protein.
 
  
 0.780
AMN45566.1
Short-chain dehydrogenase.
 
  
 0.774
AMN47016.1
Oxidoreductase.
 
  
 0.774
AMN48186.1
Hypothetical protein.
       0.773
AMN47688.1
Short-chain dehydrogenase.
 
  
 0.769
AMN47892.1
Short-chain dehydrogenase.
 
  
 0.769
AMN47015.1
Oxidoreductase.
 
  
 0.768
AMN46859.1
3-oxoacyl-ACP reductase.
 
  
 0.707
AMN45731.1
Pteridine reductase.
 
  
 0.706
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.