STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN48283.1Type IV pilus assembly protein PilM. (353 aa)    
Predicted Functional Partners:
AMN48282.1
Type IV pilus assembly protein PilN.
 
 
 0.998
AMN48281.1
Type IV pilus assembly protein PilO.
 
 
 0.990
AMN48279.1
Type IV pilus assembly protein PilQ.
 
 
 0.976
AMN48280.1
Type IV pilus assembly protein PilP.
 
 
 0.973
AMN45615.1
Hypothetical protein.
  
 
   0.894
AMN47265.1
Type IV pilus assembly protein PilV.
 
   
 0.816
AMN46997.1
Pilus assembly protein PilZ.
  
   
 0.813
AMN47812.1
Type IV pilus assembly protein PilC.
 
 
 
 0.804
AMN47269.1
Type IV pilus assembly protein PilE.
 
   
 0.784
AMN47266.1
Type IV pilus assembly protein PilW.
 
   
 0.776
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.