STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN48390.1RND transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (468 aa)    
Predicted Functional Partners:
AMN48388.1
Multidrug ABC transporter substrate-binding protein.
  
 0.979
AMN48389.1
Macrolide ABC transporter ATP-binding protein.
 
 0.966
AMN48391.1
Hypothetical protein.
 
 0.807
AMN48387.1
S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
       0.620
AMN47385.1
Transporter.
 
 0.551
AMN47106.1
RND transporter.
 
 
 0.528
AMN47945.1
RND transporter.
 
 
 0.527
AMN48026.1
RND transporter.
 
 
 0.527
AMN48310.1
Hypothetical protein.
 
 
 0.518
AMN48385.1
Hypothetical protein.
  
 
 0.487
Your Current Organism:
Steroidobacter denitrificans
NCBI taxonomy Id: 465721
Other names: DSM 18526, JCM 14622, S. denitrificans, Steroidobacter denitrificans Fahrbach et al. 2008, gamma proteobacterium FS-2007, strain FS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.