STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsBD-ribose-binding periplasmic protein; silverDB:etchr00016. (293 aa)    
Predicted Functional Partners:
rbsC
Ribose transport permease system protein; silverDB:etchr00015; Belongs to the binding-protein-dependent transport system permease family.
 0.998
rbsA
D-ribose high-affinity transport protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.994
rbsD
D-ribose high-affinity transport system; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.990
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.952
ETA_16640
Sugar ABC transporter permease component; silverDB:etchr01654; Belongs to the binding-protein-dependent transport system permease family.
 
 0.893
ETA_13790
Sugar ABC transporter, permease protein; silverDB:etchr01369; Belongs to the binding-protein-dependent transport system permease family.
 
 0.882
rbsR
Transcriptional repressor for rbs operon (GalR/LacI family); silverDB:etchr00018.
 
   
0.879
araH
High-affinity L-arabinose transport system membrane protein; silverDB:etchr01757; Belongs to the binding-protein-dependent transport system permease family.
 
 0.877
barA
Signal transduction histidine-protein kinase BarA; silverDB:etchr02713.
   
 
 0.858
ETA_34270
Ribose transport system, permease protein; silverDB:etchr03413; Belongs to the binding-protein-dependent transport system permease family.
 
 0.858
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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