STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yigQPutative periplasmic protein of unknown function; silverDB:etchr00085. (310 aa)    
Predicted Functional Partners:
ETA_00870
Putative exported peptidase; silverDB:etchr00086.
 
   
 0.911
ETA_00790
Glycosyl transferase, family 9; silverDB:etchr00078.
 
     0.654
waaC
Heptosyltransferase I WaaC; silverDB:etchr00082.
 
     0.630
waaD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
       0.543
ychP
Putative invasin; silverDB:etchr01851.
  
     0.533
waaF
ADP-heptose--lps heptosyltransferase II; silverDB:etchr00083.
       0.525
ETA_28040
Conserved hypothetical protein (UPF0149); silverDB:etchr02792; Belongs to the UPF0149 family.
  
     0.478
ETA_00820
Glycosyl transferase, group 1; silverDB:etchr00081.
       0.474
rcsF
Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.462
waaL
Lipid A core, surface polymer ligase WaaL; silverDB:etchr00080.
       0.460
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.