STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiiRConserved hypothetical protein YiiR; silverDB:etchr00107. (147 aa)    
Predicted Functional Partners:
flgM
Negative regulator of flagellin synthesis; silverDB:etchr02031.
  
     0.757
ETA_12640
Conserved hypothetical protein; silverDB:etchr01254.
  
     0.750
yiiQ
Conserved hypothetical protein YiiQ; silverDB:etchr00106.
 
     0.730
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.716
ydiV
Conserved hypothetical protein YdiV; silverDB:etchr01821.
  
    0.714
yniB
Hypothetical protein YniB; silverDB:etchr01834.
  
     0.709
mukF-2
MukF protein (Killing factor KicB); silverDB:etchr02123.
  
     0.682
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.678
ynfB
Conserved hypothetical protein YnfB; silverDB:etchr01741; Belongs to the UPF0482 family.
  
     0.678
yhhK
Conserved hypothetical protein YhhK; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
 
     0.677
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.