Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
aapPL-amino acid ABC transporter ATP-binding protein; silverDB:etchr00250. (248 aa)    
Predicted Functional Partners:
yhdY
Putative transport system permease protein; silverDB:etchr00251.
 
 0.996
yhdX
Hypothetical amino-acid ABC transporter permease protein; silverDB:etchr00252.
 
 
 0.994
aapJ
General L-amino ABC transporter binding protein; silverDB:etchr00253; Belongs to the bacterial solute-binding protein 3 family.
 
 0.992
glnP
Glutamine transport system permease protein; silverDB:etchr02196.
   0.864
gltK-2
Glutamate/aspartate transport system permease; silverDB:etchr02332.
 
 0.862
gltJ
GltJ protein; silverDB:etchr00477.
 
   0.853
gltK
GltK protein; silverDB:etchr00478.
 
 
 0.849
mdlB
Multidrug resistance-like ATP-binding protein; silverDB:etchr02484.
 
     
0.839
ETA_27130
Putative amino-acid transport system permease protein; silverDB:etchr02701.
   0.839
ETA_12370
Putative ABC transporter, permease; silverDB:etchr01228.
   0.832
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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