Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yhdYPutative transport system permease protein; silverDB:etchr00251. (366 aa)    
Predicted Functional Partners:
aapP
L-amino acid ABC transporter ATP-binding protein; silverDB:etchr00250.
 
 0.996
yhdX
Hypothetical amino-acid ABC transporter permease protein; silverDB:etchr00252.
 
0.994
aapJ
General L-amino ABC transporter binding protein; silverDB:etchr00253; Belongs to the bacterial solute-binding protein 3 family.
 
  0.992
gltL-2
Glutamate-aspartate ABC transporter ATP-binding component; silverDB:etchr02333.
 
 
 0.783
gltJ
GltJ protein; silverDB:etchr00477.
 
  0.728
ETA_26180
Putative amino acid ABC transporter, ATP-binding protein; silverDB:etchr02606.
 
 
 0.682
glnQ
Glutamine transport ATP-binding protein; silverDB:etchr02197.
 
 
 0.678
ETA_12360
ABC transporter, ATP-binding protein; silverDB:etchr01227.
 
 
 0.622
ETA_27140
Putative amino-acid ABC transporter, ATP-binding protein; silverDB:etchr02702.
 
 
 0.580
artJ
Arginine-binding periplasmic protein 2; silverDB:etchr02160; Belongs to the bacterial solute-binding protein 3 family.
   0.575
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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