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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETA_03220ABC transporter, ATP-binding protein; silverDB:etchr00321. (270 aa)    
Predicted Functional Partners:
yrbE
ABC transporter, permease subunit, probable toluene tolerance protein; silverDB:etchr00322.
 
 0.999
ETA_03240
Putative membrane protein; silverDB:etchr00323.
 
 0.999
yrbC
Putative ABC superfamily transport protein; silverDB:etchr00324.
 
 
 0.980
ETA_03260
Anti-sigma B factor antagonist; silverDB:etchr00325.
  
 0.980
yebT
Conserved hypothetical protein YebT; silverDB:etchr01502.
  
 
 0.768
ETA_03080
Glutamate synthase (NADPH); silverDB:etchr00307.
       0.665
yrbH
Putative isomerase; silverDB:etchr00319.
       0.625
ETA_03210
Sodium/calcium exchanger protein; silverDB:etchr00320.
       0.569
yhbG
Putative ABC superfamily transport protein; silverDB:etchr00315.
 
   
0.542
yrbK
Possible exported protein YrbK; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
     
 0.540
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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