Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrfE-2Adaptor/initiator (mannose-resistance fimbriae), MrfE protein; silverDB:etchr00401. (205 aa)    
Predicted Functional Partners:
mrfF-2
Minor fimbrial subunit (mannose-resistance fimbriae), MrfF protein; silverDB:etchr00400.
  
   0.816
mrfD-2
Periplasmatic chaperonin (mannose-resistance fimbriae), MrfD protein; silverDB:etchr00402.
  
   0.625
mrfC-2
Outer membrane platform usher (mannose-resistance fimbriae), MrfC protein; silverDB:etchr00403.
  
   0.522
ETA_03990
Hypothetical protein; silverDB:etchr00399.
       0.461
mrfB-2
Fimbrial anchor (mannose-resistance fimbriae), MrfB protein; silverDB:etchr00404.
       0.420
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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