Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mrfAMajor fimbrial subunit (mannose-resistance fimbriae), MrfA protein; silverDB:etchr00405. (177 aa)    
Predicted Functional Partners:
mrfC-2
Outer membrane platform usher (mannose-resistance fimbriae), MrfC protein; silverDB:etchr00403.
 
   0.934
mrfD-2
Periplasmatic chaperonin (mannose-resistance fimbriae), MrfD protein; silverDB:etchr00402.
 
   0.912
mrfC
MrfC protein; silverDB:etchr00260.
  
   0.857
mrfD
MrfD protein; silverDB:etchr00261.
  
   0.849
pmfC
Outer membrane usher protein PmfC; silverDB:etchr03007.
  
   0.826
pmfD
Chaperone protein PmfD; silverDB:etchr03006.
  
   0.818
faeE
Outer membrane usher protein; silverDB:etchr00159.
  
   0.774
ETA_16500
Fimbrial biogenesis outer membrane usher protein; silverDB:etchr01640.
  
   0.735
ETA_33030
Outer membrane usher protein; silverDB:etchr03289.
  
   0.703
fimD
Outer membrane usher protein, FimD; silverDB:etchr02854.
  
   0.689
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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