Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ampHPenicillin-binding protein; silverDB:etchr00411. (391 aa)    
Predicted Functional Partners:
bacA
Similar to bacitracin synthetase 1 (BA1), protein contains non-ribosomal peptide synthetase modules; silverDB:etchr02904.
 
  
 0.867
bssS
Biofilm regulator; silverDB:etchr02042.
  
     0.602
csiE
Stationary phase-inducible protein; silverDB:etchr01005.
  
     0.589
ETA_18840
Putative membrane protein; silverDB:etchr01873.
  
     0.582
mdoB
Phosphoglycerol transferase I; silverDB:etchr00412.
       0.560
ETA_07370
Putative transport protein; silverDB:etchr00728.
  
     0.544
ynfB
Conserved hypothetical protein YnfB; silverDB:etchr01741; Belongs to the UPF0482 family.
  
     0.535
yniB
Hypothetical protein YniB; silverDB:etchr01834.
  
     0.497
ymoA
Putative YmoA, negative regulator of invasin expression; silverDB:etchr02477.
  
     0.477
ETA_13580
8-amino-7-oxononanoate synthase; silverDB:etchr01348.
  
  
 0.430
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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