Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tolCOuter membrane protein TolC; silverDB:etchr00432. (493 aa)    
Predicted Functional Partners:
acrA
Acriflavine resistance protein A precursor; silverDB:etchr02468; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.983
acrB
Acriflavine resistance protein B; silverDB:etchr02469.
 
 0.961
ETA_20680
Type I secretion outer membrane protein; silverDB:etchr02056.
     
 0.910
nodT
RND efflux system, outer membrane lipoprotein; silverDB:etchr02759.
     
 0.910
ETA_30090
Putative RND efflux system, outer membrane lipoprotein; silverDB:etchr02996.
     
 0.910
mclA
Putative microcin L transport protein; silverDB:etchr03335.
 
 
 0.884
mdtA
Multidrug resistance protein; silverDB:etchr01302; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.833
ETA_27740
Secretion protein HlyD; silverDB:etchr02762; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.833
macA
Macrolide-specific efflux protein; silverDB:etchr02998; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.833
emrA
Multidrug resistance secretion protein A; silverDB:etchr00921.
  
 
 0.827
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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