STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dkgA2,5-diketo-D-gluconic acid reductase A; silverDB:etchr00444. (274 aa)    
Predicted Functional Partners:
ETA_15550
PrkA serine kinase; silverDB:etchr01545.
   
    0.692
yqhC
Putative ARAC-type regulatory protein; silverDB:etchr00445.
     
 0.655
ydiZ
Putative cytoplasmic protein YdiZ; silverDB:etchr01832.
   
    0.654
yqjD
Conserved hypothetical protein YqjD; silverDB:etchr02896.
   
    0.654
msyB
Acidic protein MsyB; silverDB:etchr02049.
   
    0.560
tkrA
2-ketogluconate reductase; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.
  
 0.548
ETA_13130
Probable oxidoreductase; silverDB:etchr01303.
 
 
 0.532
yqjC
Putative exported protein YqjC; silverDB:etchr02895.
   
    0.530
osmC
Osmotically inducible protein C; silverDB:etchr02383.
  
    0.523
otsB
Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
   0.484
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.