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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddcL-2,4-diaminobutyrate decarboxylase; silverDB:etchr00447. (490 aa)    
Predicted Functional Partners:
dat
Diaminobutyrate-2-oxoglutarate aminotransferase; silverDB:etchr00446; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.994
ETA_30280
Putative decarboxylase; silverDB:etchr03015.
  
  
 
0.909
alcC
Probable alcaligin biosynthesis protein; silverDB:etchr03017.
 
  
 0.773
dfoA
Probable siderophore biosynthetic enzyme; silverDB:etchr03016.
 
  
 0.762
bacA
Similar to bacitracin synthetase 1 (BA1), protein contains non-ribosomal peptide synthetase modules; silverDB:etchr02904.
 
  
 0.501
yqhC
Putative ARAC-type regulatory protein; silverDB:etchr00445.
       0.476
ETA_12170
Conserved hypothetical protein; silverDB:etchr01208.
  
  
 0.431
ETA_13580
8-amino-7-oxononanoate synthase; silverDB:etchr01348.
   
 
 0.414
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.