Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
csuECsuE protein (chaperone-usher pili assembly system), hypothetical secreted protein; silverDB:etchr00454. (326 aa)    
Predicted Functional Partners:
csuC
CsuC protein, similar to fimbrial chaperone proteins (chaperone-usher pili assembly system); silverDB:etchr00456.
 
 
 0.986
csuB
CsuB protein (chaperone-usher pili assembly system); silverDB:etchr00457.
 
   
 0.974
csuD
CsuD protein (chaperone-usher pili assembly system), similar to fimbrial usher proteins; silverDB:etchr00455.
 
  
 0.969
csuA
Putative membrane protein CsuA (chaperone-usher pili assembly system); silverDB:etchr00458.
     
 0.852
ETA_14370
Predicted acyltransferase 3; silverDB:etchr01427.
  
     0.638
ETA_19560
Putative hemolysin; silverDB:etchr01945.
  
     0.545
yghA
Putative oxidoreductase YghA; silverDB:etchr00453.
     
 0.501
ETA_25590
Hypothetical protein, probable fragment; silverDB:etchr02547.
  
     0.481
fhaB2
Hypothetical protein; silverDB:etchr01951.
  
     0.403
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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