Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
csuBCsuB protein (chaperone-usher pili assembly system); silverDB:etchr00457. (164 aa)    
Predicted Functional Partners:
csuC
CsuC protein, similar to fimbrial chaperone proteins (chaperone-usher pili assembly system); silverDB:etchr00456.
 
 
 0.984
csuD
CsuD protein (chaperone-usher pili assembly system), similar to fimbrial usher proteins; silverDB:etchr00455.
  
 0.977
csuE
CsuE protein (chaperone-usher pili assembly system), hypothetical secreted protein; silverDB:etchr00454.
 
   
 0.974
csuA
Putative membrane protein CsuA (chaperone-usher pili assembly system); silverDB:etchr00458.
    
 0.953
lpxT
Putative membrane-bound phosphatase; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family.
  
     0.528
tfoX
Regulator of competence-specific genes; silverDB:etchr02089.
  
    0.523
mrfA
Major fimbrial subunit (mannose-resistance fimbriae), MrfA protein; silverDB:etchr00405.
  
     0.494
ETA_25590
Hypothetical protein, probable fragment; silverDB:etchr02547.
  
     0.494
ETA_27570
Putative prepilin peptidase dependent protein; silverDB:etchr02745.
  
     0.490
yghA
Putative oxidoreductase YghA; silverDB:etchr00453.
     
 0.472
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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