Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
codBCytosine permease; silverDB:etchr00485. (432 aa)    
Predicted Functional Partners:
codA
Conserved hypothetical protein, fragment; silverDB:etchr03183.
 
  
 0.841
pyrI
Aspartate transcarbamylase regulatory subunit PyrI; Involved in allosteric regulation of aspartate carbamoyltransferase.
   
    0.659
pyrB
Aspartate transcarbamylase catalytic subunit PyrB; silverDB:etchr00363; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.659
carA
Carbamoyl-phosphate synthase small chain; silverDB:etchr00709; Belongs to the CarA family.
   
    0.655
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
   
    0.655
carB
Carbamoyl-phosphate synthase large chain; silverDB:etchr00710; Belongs to the CarB family.
   
    0.654
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
   
    0.653
ETA_04860
Hypothetical protein; silverDB:etchr00486.
       0.555
upp
Uracil phosphoribosyltransferase; silverDB:etchr01049; Belongs to the UPRTase family.
   
  
 0.536
ETA_08470
Transcriptional regulatory protein, LuxR; silverDB:etchr00838.
 
     0.485
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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