Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
hrpFHrpF protein (hrp cluster); silverDB:etchr00532. (74 aa)    
Predicted Functional Partners:
hrpG
HrpG protein (hrp cluster); silverDB:etchr00533.
       0.872
hrcC
HrcC protein (hrp cluster); silverDB:etchr00534.
       0.872
hrpT
HrpT protein (hrp cluster); silverDB:etchr00535.
     
 0.869
hrpV
HrpV protein (hrp cluster); silverDB:etchr00536.
     
 0.869
hrpE
HrpE protein (hrp cluster); silverDB:etchr00531.
     
 0.725
hrpD
HrpD protein (hrp cluster); silverDB:etchr00530.
     
 0.652
hrpB
HrpB protein; silverDB:etchr00528.
       0.645
hrcJ
HrcJ protein (hrp cluster); silverDB:etchr00529.
       0.645
hrpN
Elicitor of the hypersensitivity reaction HrpN (hrp cluster); silverDB:etchr00537.
     
 0.543
hrpA
Hrp pili protein hrpA (TTSS pilin HrpA), hrp cluster; silverDB:etchr00527.
     
 0.538
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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