Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CIBacteriophage 186 repressor protein CI; silverDB:etchr00554. (192 aa)    
Predicted Functional Partners:
int
Bacteriophage 186 integrase; silverDB:etchr00553.
  
    0.844
ETA_05520
Hypothetical protein; silverDB:etchr00552.
       0.746
ETA_05580
Prophage protein; silverDB:etchr00556.
  
    0.696
ETA_05600
Phage-related protein; silverDB:etchr00558.
  
    0.628
ETA_05590
Phage-related protein; silverDB:etchr00557.
  
    0.615
cII
Phage regulatory protein; silverDB:etchr00555.
  
    0.583
ETA_05570
Conserved hypothetical protein; silverDB:etchr10004.
  
    0.573
apl
Phage regulatory protein; silverDB:etchr10003.
       0.533
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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