STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETA_06010Putative iron-regulated membrane protein; silverDB:etchr00594. (489 aa)    
Predicted Functional Partners:
ETA_06020
Hypothetical protein; silverDB:etchr00595.
  
    0.815
nosA
TonB dependent receptor; silverDB:etchr01673.
 
  
 0.678
ycdB
Conserved hypothetical protein YcdB; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
    0.494
dfoA
Probable siderophore biosynthetic enzyme; silverDB:etchr03016.
 
    0.434
jen
Putative metabolite transport protein; silverDB:etchr00596.
       0.432
alcC
Probable alcaligin biosynthesis protein; silverDB:etchr03017.
 
    0.420
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.