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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcATwo-component system, OmpR family, aerobic respiration control protein ArcA; silverDB:etchr00688. (238 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration control sensor protein ArcB; silverDB:etchr00308.
 
 0.998
barA
Signal transduction histidine-protein kinase BarA; silverDB:etchr02713.
 
 
 0.901
cpxA
Sensory kinase in two-component regulatory system with CpxR; silverDB:etchr00093.
 
 
 0.797
envZ
Osmolarity sensor protein; silverDB:etchr03204.
 
 
 0.765
nuoC
NADH dehydrogenase I C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
  
   0.743
tRNA-Arg
tRNA-Arg; tRNAscan-SE-score 69.56.
 
 
 0.742
phoR
Phosphate regulon histidine kinase; silverDB:etchr02535.
 
 
 0.685
rcsC
Sensor kinase protein (Capsular synthesis regulator component C); Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 
 
0.661
pmrB
Two-component system sensor protein; silverDB:etchr00334.
 
 
 0.639
ETA_10960
Putative two-component system sensor kinase; silverDB:etchr01087.
 
 
 0.605
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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