Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hofBTransport protein HofB; silverDB:etchr00792. (466 aa)    
Predicted Functional Partners:
hofC
Putative outer membrane protein export (MTB) system; silverDB:etchr00791.
 
 
 0.991
outF
General secretion pathway protein F (Pectic enzymes secretion protein outF); silverDB:etchr00781.
 
 
 0.938
ppdD
Prelipin peptidase dependent protein; silverDB:etchr00793.
 
  
 0.910
outO
Type IV-A prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.887
outG
General secretion pathway protein G; silverDB:etchr00780.
 
 
 0.877
outL
General secretion pathway protein L; silverDB:etchr00775.
  
 
 0.836
hofQ
Putative type II secretion system protein; silverDB:etchr03193.
 
 
 
 0.765
ETA_21400
Putative competence-related protein; silverDB:etchr02128.
  
  
 0.736
outI
General secretion pathway protein I; silverDB:etchr00778.
  
 
 0.661
outH
General secretion pathway protein H; silverDB:etchr00779.
  
 
 0.653
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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