Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ppdDPrelipin peptidase dependent protein; silverDB:etchr00793. (147 aa)    
Predicted Functional Partners:
hofC
Putative outer membrane protein export (MTB) system; silverDB:etchr00791.
 
   
 0.915
hofB
Transport protein HofB; silverDB:etchr00792.
 
  
 0.910
hofQ
Putative type II secretion system protein; silverDB:etchr03193.
 
   
 0.734
ETA_28040
Conserved hypothetical protein (UPF0149); silverDB:etchr02792; Belongs to the UPF0149 family.
  
     0.642
ETA_10300
Conserved hypothetical protein; silverDB:etchr01021.
  
     0.620
tehB
Protein involved in tellurite resistance; silverDB:etchr01040.
  
     0.608
nadC
Nicotinate-nucleotide pyrophosphorylase; silverDB:etchr00794; Belongs to the NadC/ModD family.
  
    0.588
ppdB
Prepilin peptidase dependent protein B; silverDB:etchr02744.
  
   
 0.570
tfoX
Regulator of competence-specific genes; silverDB:etchr02089.
  
   
 0.543
mltB
Membrane-bound lytic murein transglycosylase B; silverDB:etchr02658.
 
     0.540
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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