STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampDN-acetylmuramyl L-alanine amydase; silverDB:etchr00797. (191 aa)    
Predicted Functional Partners:
ampE
AmpE protein (Putative transmembrane protein); silverDB:etchr00798.
     
 0.883
ampR
AmpR transcriptional regulator; silverDB:etchr00507; Belongs to the LysR transcriptional regulatory family.
      
 0.585
ETA_08050
Putative transcriptional regulator protein, LysR family; silverDB:etchr00796; Belongs to the LysR transcriptional regulatory family.
       0.535
folA
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
     
 0.432
nadC
Nicotinate-nucleotide pyrophosphorylase; silverDB:etchr00794; Belongs to the NadC/ModD family.
  
  
 0.422
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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