Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yacCHypothetical protein; silverDB:etchr00823. (115 aa)    
Predicted Functional Partners:
rcsF
Regulator in colanic acid synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.772
ETA_28430
Putative exported protein; silverDB:etchr02831.
  
     0.771
yiiQ
Conserved hypothetical protein YiiQ; silverDB:etchr00106.
  
     0.770
yiaF
Conserved hypothetical protein YiaF; silverDB:etchr03402.
  
     0.769
ygaC
Putative cytoplasmic protein; silverDB:etchr00932.
  
     0.768
ETA_34470
Putative lipoprotein; silverDB:etchr03433.
  
     0.767
ydbH
Hypothetical protein YdbH; silverDB:etchr01650.
  
     0.766
yniB
Hypothetical protein YniB; silverDB:etchr01834.
  
     0.766
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.764
ypfN
Conserved hypothetical protein YpfN; silverDB:etchr01062.
  
     0.764
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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