STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kgtPAlpha-ketoglutarate permease; silverDB:etchr00913. (436 aa)    
Predicted Functional Partners:
bacA
Similar to bacitracin synthetase 1 (BA1), protein contains non-ribosomal peptide synthetase modules; silverDB:etchr02904.
  
  
 0.490
nasB
Nitrite reductase [NAD(P)H] large subunit; silverDB:etchr01708; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
  
 0.472
rpmE2
50S ribosomal protein L31 type B; silverDB:etchr02470.
   
    0.461
rpmJ
50S ribosomal protein L36; silverDB:etchr02471; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.447
rpmE1
50S ribosomal protein L31; Binds the 23S rRNA.
   
    0.439
ribE
Riboflavin synthase alpha chain; silverDB:etchr01799.
   
    0.430
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.