Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
dcyDD-cysteine desulfhydrase; silverDB:etchr01418. (330 aa)    
Predicted Functional Partners:
metC
Cystathionine beta-lyase; silverDB:etchr00449.
     
 0.925
sseA
3-mercaptopyruvate:cyanide sulfurtransferase; silverDB:etchr01014.
    
 0.912
ETA_14770
Aminotransferase, class I and II; silverDB:etchr01467.
    
  0.904
fliZ
Putative alternative sigma factor regulatory protein; silverDB:etchr01417.
       0.685
fliA
RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
     
 0.563
fliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
     
 0.470
ycfT
Inner membrane protein YcfT; silverDB:etchr01419.
       0.429
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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