Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ETA_15500Cupin family protein; silverDB:etchr01540. (176 aa)    
Predicted Functional Partners:
ETA_15490
Carboxymuconolactone decarboxylase; silverDB:etchr01539.
   
 0.986
ETA_15510
Conserved hypothetical protein; silverDB:etchr01541.
 
    0.916
bacA
Similar to bacitracin synthetase 1 (BA1), protein contains non-ribosomal peptide synthetase modules; silverDB:etchr02904.
     
 0.653
ETA_15520
Short-chain dehydrogenase/reductase SDR; silverDB:etchr01542; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.560
ETA_23990
Conserved hypothetical protein; silverDB:etchr02387.
 
  
 0.493
ETA_15530
Transcriptional regulator, LysR family; silverDB:etchr01543; Belongs to the LysR transcriptional regulatory family.
 
    0.465
yidP
Putative transcriptional regulator YidP; silverDB:etchr01389.
  
    0.452
ETA_22230
GntR-family transcriptional regulatory protein; silverDB:etchr02211.
  
    0.452
npdA
NAD-dependent deacetylase; silverDB:etchr01964; Belongs to the sirtuin family. Class III subfamily.
  
    0.426
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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