Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppAPeriplasmic oligopeptide-binding protein; silverDB:etchr01574. (543 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein; silverDB:etchr01575.
 
 0.994
oppC
Oligopeptide transport system permease protein; silverDB:etchr01576.
 
 
 0.991
oppF
ATP-binding protein of oligopeptide ABC transport system; silverDB:etchr01578; Belongs to the ABC transporter superfamily.
 
 
 0.989
oppD
ATP-binding protein of oligopeptide ABC transport system; silverDB:etchr01577; Belongs to the ABC transporter superfamily.
 
 
 0.988
ETA_15830
Periplasmic oligopeptide-binding protein; silverDB:etchr01573.
 
  
 
0.944
ETA_16480
Periplasmic murein peptide-binding protein; silverDB:etchr01638.
  
  
 
0.905
dppB-2
Dipeptide transport system permease protein; silverDB:etchr03384.
 
 
 0.609
yliC
Putative ABC transporter permease protein; silverDB:etchr02177.
 
 
 0.595
ETA_25740
Putative ABC transporter permease protein; silverDB:etchr02562.
 
 
 0.590
ETA_13920
ABC transporter, permease protein; silverDB:etchr01382.
 
 
 0.576
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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