Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xylBXylulose kinase; silverDB:etchr01656. (505 aa)    
Predicted Functional Partners:
ETA_16670
D-xylulose reductase; silverDB:etchr01657.
 
 
 0.985
ETA_16680
Conserved hypothetical protein; silverDB:etchr01658.
 
  
  0.965
araD
L-ribulose-5-phosphate 4-epimerase; silverDB:etchr01617.
 
 
 0.953
dalD
D-arabinitol 4-dehydrogenase; silverDB:etchr03395.
 
 
 0.938
rpe
Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase); silverDB:etchr03188; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.937
ETA_16650
Sugar ABC transporter ATP-binding component; silverDB:etchr01655.
 
  
 0.831
ETA_16640
Sugar ABC transporter permease component; silverDB:etchr01654; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.791
ETA_16630
Sugar ABC transporter periplasmic component; silverDB:etchr01653.
 
  
 0.748
ptsH
PTS system phosphocarrier protein; silverDB:etchr01090.
    
 
 0.701
ETA_16690
LacI-family transcriptional regulatory protein; silverDB:etchr01659.
 
 
 
 0.658
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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